Opening source file causes File not found exception

Hi, I just started using guild and I’m trying to integrate it with an existing project.
I have the following directory structure:

project/
├─ configs/
│  ├─ __init__.py
│  ├─ cfg1.py
│  ├─ cfg2.py
├─ utils/
│  ├─ base_config.py

Where the config files contain something similar to

from utils.base_config import BaseConfig

class Config(BaseConfig):
    class Model:
        architecture: MLP
        class Parameters:
             pass

if __name__ == "__main__":
    Config.init()
    train.main()

and BaseConfig.py among other things does this

import __main__

class BaseConfig:
    @classmethod
    def init(cls):
        with Path('configs/__init__.py').open('w+') as f:
            f.writelines([f'from .{Path(str(__main__)).stem } import Config'])
            f.flush()

Now, when I run guild run configs/cfg1.py I get the following error:

Traceback (most recent call last):
  File "C:\Users\username\PycharmProjects\project\configs\cfg1.py", line 56, in <module>
    Config.init()
  File "C:\Users\username\PycharmProjects\project\utils\base_config.py", line 13, in init
    with Path('configs/__init__.py').open('w+') as f:
  File "C:\Users\username\.conda\envs\project_env\lib\pathlib.py", line 1252, in open
    return io.open(self, mode, buffering, encoding, errors, newline,
  File "C:\Users\username\.conda\envs\project_env\lib\pathlib.py", line 1120, in _opener
    return self._accessor.open(self, flags, mode)
FileNotFoundError: [Errno 2] No such file or directory: 'configs\\__init__.py'

Then, when I look into the sourcecode directory of the run I see that only __init__.py, cfg1.py and cfg2.pyare present and the directory structure is not preserved (i.e. the three files are not under configs). Any idea on how to solve this?

Also, I was wondering how I could log the configuration file. I tried playing with flag-dest:config but couldn’t manage to make it work.